PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo14G0011300
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family bHLH
Protein Properties Length: 458aa    MW: 49545 Da    PI: 6.0927
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo14G0011300genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH25.91.8e-08244270530
                      HHHHHHHHHHHHHHHHHHHHCTSCC.C CS
              HLH   5 hnerErrRRdriNsafeeLrellPk.a 30 
                      h + Er+RR+++N++f+ Lr llP+  
  Spipo14G0011300 244 HMISERKRREKLNESFSALRMLLPPgT 270
                      8899********************944 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474598.92E-11236271IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088811.134239332IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.26E-7241268No hitNo description
Gene3DG3DSA:4.10.280.103.6E-11243269IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.8E-6244270IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-7245338IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.92E-11314348IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.6E-11316348IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 458 aa     Download sequence    Send to blast
MDGGFAGQPS CYAASTSQQG PFDPYGSSFC DQAGLPGFGF KDGLDCLEVN ESPMSSGASG  60
LTQSQFYQVA AQMGVESMMI AGEFVPQSPL GEFFQPDQNL RSLSSSSMRS LSVGSPSSVE  120
QVAHRVTILA YDQFQGVQFP TPTGDDASMV RAMLAVMSSS SSSSSPRPSA TSSAWHGQGR  180
SRGGAFKPYD TAAAAAVAGV EARNLSPGQE MMKRIFSLLR RISPMSGGEA RLQESRPTTN  240
QLHHMISERK RREKLNESFS ALRMLLPPGT KARPRLPLSS SFFSPSSSSS SSSPNTSRLR  300
LLPRLNLISA AFVFLKDKAS VLASAIDQVN ALRSQISDLE EKNRSMEMSI LPPDEEDGEQ  360
EIIRMTSAIE PSSGKQVLEL RVTVPAECDM IDLALHILEF LRERPEVNLL SLDASIYLRQ  420
KNSVRLTILT IRLQGGEGWD ERPFKEAVSR AINEALA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1247252ERKRRE
2248253RKRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP101743136
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56960.11e-26bHLH family protein